Before chasing after Cortex, Crash's big brother instincts kicked in, and he went to find Coco. 

Which wasn't hard, as her cell was right near where you all fought N. Brio! 

Coco: CRASH! THERE YOU ARE! 

Crash broke his sister out, and she gave him a big hug! 

Coco: Thanks Big Brother! Okay, I'm going to set this place to blow! 

At the same time... 

Cortex was getting away on his blimp, only to notice you all on top of it. 

Cortex: Of all the dumb- 

He got onto a hoverboard to face you. 

https://youtu.be/bDJKhTKTZAE

Cortex: You little pests! I'm going to make you pay!

(Y/N): Bring it on, Baldy! 

Cortex: GRRR! 

He took out his ray gun and began to fire, electro orbs, which moved all around the ship, making all of you dodge, and then he fired a green one, which Ruby hit with Crescent Rose, and it bounced at Cortex! 

Cortex: AGH! 

Ruby: The green ones! Hit the green ones! 

Weiss: Wait, Ruby, how did you know that the green ones would go back and- 

Ruby: I just thought, you know, green = good, so- 

Weiss: So, instinct? 

Ruby: Instinct. 

(Y/N): Do it again! 

Cortex: AAAAAAAAAARGH! 

He started firing his energy shots rapidly, only for the green shots to start getting reflected back at him, over and over again. 

Cortex: STOP THA- 

Fluttershy: THIS IS FOR ALL THE POOR INNOCENT ANIMALS THAT YOU MUTATED! (quietly) Even Pinstripe. 

She kicked him so hard, that his hoverboard got damaged! 

Cortex: Oh no. AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGH! 

He fell down to the islands below. 

Team (Y/N): WAY TO GO FLUTTERS!!!! 

Fluttershy: Hahahaha. 

She blushed and smiled at that. 

https://youtu.be/20q0sF4Kgnw

You, Ruby, Weiss, Blake, Yang, Crash, Coco, Fluttershy, and Aku Aku watched Cortex's castle explode from Cortex's blimp. 

(Y/N): All's well that ends well, right guys? 

Everyone: Yep!/(Crash Babble)!/Indeed./I'll say! 

As for Cortex... 

Cortex found himself inside of a dark cave. 

Cortex: What is this? Where am I?

He took out a match and then saw a bunch of purple glowing skinny crystals. 

Cortex: HAHAHAHAHAHAHAHAHA! Crystals, of course! 

Then the light went out. 

Cortex: DOH!